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PyFBA: Simulating genome-scale metabolic models
A computational pipeline for novel phage discovery in metagenomic samples
An untargeted exploration of the Boechera depauperata heat-shock metabolome
Quantitative analysis of built environment microbial communities
Automation of ChromaTOF and software development for non-targeted analysis of contaminants
RNA-Seq analysis of the heat stress response in two Boechera species
mRNA structure and amino acid permutation drive codon amelioration and selection in Mycobacterium tuberculosis
Epigenetic regulation in Mycobacterium tuberculosis
A bioinformatics approach for dengue and Zika virus substrate discovery within the human proteome
User-customizable genome wide association study tool and “blind spots” in common sequencing platforms for M. tuberculosis
Workflow for compound identification in untargeted metabolomics
Machine-learning based identification of metagenomic source environments
Evaluating the accuracy of metabolic models using untartgeted metabolomics and flux balance analysis
Genome assembly for USA100 MRSA strain 209 and Corynebacterium accolens strain AH4003
Computational methods to analyze complex metagenomic data
Comparative analysis of gene annotation tools
Identification of multiple and novel drug resistance in mycobacterium tuberculosis utilizing protein-protein interaction networks
The use of signature genes and motifs to evaluate genome completeness in phages
Standalone blast web application for planarian transcriptome data
Characterization of fluoroquinolone resistance in mycobacterium tuberculosis clinical isolates using molecular dynamics and targeted genome wide variant analysis

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